Customize- and custom-set-variable

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In some rde features there were a few custom-set-variables calls and
they modify custom.el, which is not very good because it produce a hard
to control stateful configuration.

Now customize-set-variable or setq used instead to set default value and
to not modify custom.el

Please, cleanup all unecessary values from ~/.cache/emacs/custom.el.

Best regards,
Andrew Tropin
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